rs49723526 SNP Detail

Summary

• ID
  rs49723526
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42352558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACAGTGA CATGATGGGA
  AGAAAAGACA CAATTGAAGT TGCTGGTTAT TGAGATACCT AGAAGTCAAC TTGGGGAACT
  TATCATACCT AATAATAATA ATAAAAGAGC AACTTCTATG CATCACTGCA TTCTCAGTTG
  TACTGAGGTA TTTTCCTTTG TGCAACAGGA AAGAAAACAT ACAAGCAACT TAAAAGATTA
  Y
  CTGAAGAACC TCACTCTGAA GTTGCTTCTT CACACCCTCC TGGAAGAATG GGAAATGAAA
  AGAGAATGCC CATCAGTGTC TAAATCAGAA AGCTGGCAGG GTGACTGTCA GTTTTAATGA
  ACATCGCCCT CTTCTAACTA GTAGCAAAAA TTCTAGTCAT GTGACCTATT GACAAGAAAT
  TGAATTCCAT AGTGATTTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52630407	NES15520204	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49723526					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52630407	NES15520204	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42352558 () rs orientation: forward

Symbol	Name	Function Class
4732499D12Rik	RIKEN cDNA 4732499D12 gene	651 bp upstream
Gm32778	predicted gene, 32778	within coordinates
Rr478128	regulatory region 478128	1218 bp distal