rs49723623 SNP Detail

Summary

• ID
  rs49723623
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98849674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATCAGGC TGGATGCCAT
  GTTCCAGGCA GTAGAGCTCC CAGCAGGCAT TGCCGATCTG GACACCAGCC TGGCCAACAT
  GGATGGAGAT GCACTCACGC TGTGGAAAGA GGGAAAAAAA TTATAAAATT AAGCTGTTAT
  AATATTAAGC TGTATTTCTA TTTTAGATCT TAATAGATTT CTAAAGTGTT TCTAAAAATA
  S
  AAATATTGTT GAAATTTATT TGGAGTCACA TCCCTAATAA CAGGAACAAT GAGGAGTACT
  CACTACAAAC ACCAAAAGTG GGTGTGGCCT AGATGTCACC TTAATACTGC TTAAGACATG
  GTGCAAACCC ATTGTTTCCA AAGCCTTGCT TGAATAGAAC AGCTTTCATA TTTGAAAAAT
  ATTTAAAGCA TAGATTCTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	FVB/NJ	PWD/PhJ
ss63622763	NES17045886	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	FVB/NJ	PWD/PhJ
rs49723623					SNP	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63622763	NES17045886	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98849674 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7685	CpG island 7685	1196 bp proximal
Gm49450	predicted gene, 49450	within coordinates
Rr370012	regulatory region 370012	1425 bp upstream
Rr404613	regulatory region 404613	1677 bp upstream
Rr509234	regulatory region 509234	1914 bp distal
Rr509236	regulatory region 509236	974 bp proximal
Rr509237	regulatory region 509237	1475 bp proximal
Rr509238	regulatory region 509238	1748 bp proximal
Rr509239	regulatory region 509239	1900 bp proximal
Tssr132970	transcription start site region 132970	1258 bp upstream
Tssr132971	transcription start site region 132971	1951 bp upstream
Tssr136333	transcription start site region 136333	515 bp upstream
Tssr136334	transcription start site region 136334	1682 bp downstream
Tssr136335	transcription start site region 136335	1735 bp downstream
Tssr136336	transcription start site region 136336	1748 bp downstream
Tssr136337	transcription start site region 136337	1794 bp downstream
Tssr136338	transcription start site region 136338	1804 bp downstream
Tssr136339	transcription start site region 136339	1844 bp downstream
Tssr136340	transcription start site region 136340	1869 bp downstream
Tssr136341	transcription start site region 136341	1895 bp downstream
Tuba1a	tubulin, alpha 1A	within coordinates