rs49724776 SNP Detail

Summary

• ID
  rs49724776
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:4019812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCATTAAT TAAAAAATAA
  ACAGACAAAC AAACAAAAAA CAACACAAAT CAATAACTTA AATCCATACA TTTTTAACAA
  TCGATTCATT ACTTAGATGT ATATTGGTTC TTATTTTTGA AAGGAAGTAT GTGACTTCCA
  GTATGTCAAT GTGACTTGAA GAATGTCAGT GAAACTGGGC TATATGCTTT GTAAAGCTAG
  R
  GACAAAATTG TTGATTTCTA CCTTTAGATT CATCTTTGTA AGTTAAAAAT AAAGGAATAT
  ATTTTAAAGT ATTTTAATCA TTTAATATAT TTCCTATTTA GCAGGAACAA AAAACAAAGA
  CAAAACAAAC AAACAAACAT AAACAAAAAA GAAAAATCCT GTTTAGGTAT TAGAAGCAGT
  AAGTTTTCAA TAGTAGAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60679937	NES16238497	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49724776					SNP	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60679937	NES16238497	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:4019812 () rs orientation: forward

Symbol	Name	Function Class
Rr382823	regulatory region 382823	within coordinates