rs49725622 SNP Detail

Summary

• ID
  rs49725622
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30842569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG GCCAGAACAG GGTATCTGGT
  C
  CCCTAAAACT GGAGTTACAG GTAGT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss148700791	ENSMUSSNP1794435	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49725622					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30842569 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18838	CpG island 18838	301 bp distal
Gramd1a	GRAM domain containing 1A	within coordinates
Rr645032	regulatory region 645032	1903 bp proximal
Rr645033	regulatory region 645033	1923 bp proximal
Tssr71945	transcription start site region 71945	512 bp upstream