rs49725633 SNP Detail

Summary

• ID
  rs49725633
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135660555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGAGTAGTG ACAGCTCAGG GAGGTCTGAC
  TGACTTCTCA GAGGGGAACC ACATGTGAAG GGCTAATAGT CCTGTAAAGC TGAGACTGAG
  CTCATTTTTT GGGGGTGCCT CTCTTCTACC AGGGACCTTT ATCTTCAGGG TAGGTCTGCT
  Y
  CTTGGGTACT CAGGCGTCAC ACCAAAGATT CAGGCTTCAT GGGCTCTGAA CTTGTGCCAC
  CTTCCCTCTG ACTCTGTCCT GGCTGCTCTC TGGGCATAGG GGCGTGGAGG CAGAGACAGC
  CACAGGGCTG GAAAGGTTGA CGACACTTTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60803907	NES16474356	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	C	C	T		C	C	T		C
ss145544257	ENSMUSSNP4231201	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss319992777	CHEV_1_137629394	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49725633					SNP	C	C	T	T	T	T	T	C	C	T	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60803907	NES16474356	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135660555 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Csrp1	cysteine and glycine-rich protein 1			Intron
				Noncoding-Transcript-Variant
Rr419256	regulatory region 419256			1824 bp distal
Rr419257	regulatory region 419257			within coordinates
Rr419258	regulatory region 419258			1218 bp proximal