rs49725767 SNP Detail

Summary

• ID
  rs49725767
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54387779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC TTGTTGGCAT TTCTAAACAC
  G
  AGTTCATCTG CTTTTCCCAT CCCAG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss139556850	ENSMUSSNP3370630	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss324635124	CHEV_14_54769997	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49725767					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54387779 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	1454 bp downstream
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Trdv5	T cell receptor delta variable 5	1121 bp upstream
Tssr128536	transcription start site region 128536	1082 bp upstream
Tssr128537	transcription start site region 128537	1063 bp upstream
Tssr128538	transcription start site region 128538	1042 bp upstream
Tssr128539	transcription start site region 128539	979 bp upstream
Tssr128540	transcription start site region 128540	1077 bp downstream