rs49725836 SNP Detail

Summary

• ID
  rs49725836
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52028307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTTGTTT CTTCTTTTGA
  GAACTATCTG TTCAGTTCAT TGTTCCATTC ACTGAGTGAA GATTCATTTT CTTAGTATTT
  GGAATAAATG ATCTTAAATG TTCACTAAGA AGCCTGTGGA CTTCAGTGGA ACCTGTCCTA
  GAACTCACTC TGTACACCAG GCTGGCCTCA AACTCAAAAA TCTGCCTGTC TCTGCCTCAT
  K
  TGCCCACCAT GCCCAGCATA CACTTTATTC TTAGAGCAAA CCTAGTTGGA TCCCAAAGGT
  TCTAGTATGC CATACTTTCA TGTGCGTGGA CTCCAGGAAA ATGGAACTTT CCGATTCTCC
  AATGACCACT CAATTCAAGA GTATATTGTT CCATCTCCAA GTATTCATGG AGTTCCTGTA
  GTTTCTTTTG TTATTCATTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137728886	ENSMUSSNP1349268	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49725836					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52028307 () rs orientation: forward

Symbol	Name	Function Class
Gm60186	predicted gene, 60186	90 bp downstream
Rr387210	regulatory region 387210	1164 bp downstream
Rr387211	regulatory region 387211	1769 bp upstream