rs49726297 SNP Detail

Summary

• ID
  rs49726297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85422620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTAGCCCAT ATTCAGCTCA TGCATCCACG AGAGGCTTGG
  CTCCTATTGA CTGGCTATTA ATTTCAGGGT GGCAACATAA TGGCCAATCA GAGAGCAGAC
  Y
  GGCTTTCTTG AGAGAAAGAG GTGATGTGAA GCCTTACCTC TTCCTTATTG TTCACCTGCC
  ACAGCTGCAG CTGAAGTACT GGCCTGCCAC TTTCCAGCAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60906712	NES15956503	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49726297					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60906712	NES15956503	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85422620 () rs orientation: forward

Symbol	Name	Function Class
Pradc1	protease-associated domain containing 1	1172 bp downstream
Rr633219	regulatory region 633219	1461 bp distal
Rr633220	regulatory region 633220	5 bp distal
Rr633221	regulatory region 633221	879 bp proximal
Smyd5	SET and MYND domain containing 5	within coordinates