rs49726758 SNP Detail

Summary

• ID
  rs49726758
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112791440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTCACAC CTATTTCCAG
  ATGGCCAGAA TCGCTTTCCA AGTCTAGGTA AATGTCTGAC ATTCCTTCAG TCCAAAGCTA
  AGTCAAGGCA CAATGGTGCC CTCCAATTTT CCCCACCCAA GCACTGGCTG AACAACAAGA
  GCCAGGCATT CTGGGGGCTC AGATAGTGTT GAGGCCGGTG GACAGTAAAG TGGAAGTGAG
  K
  GCTAACTACC CTACAACAAC CTGAGGTAAA GAGACGGCCC AGGACTCCAC AACCATCATA
  TCTTGGAGCC GTCCTACCTC AGTGACCATG TGGGAGCAGC TTCCTGGGCT CTGACCATCC
  ACTAGAGTCT TGGTTTTACC TGTGCAGATC TATGACAACC CAGGCTTGGA TTGTAACCGC
  AAGCAAGCAT TCATCTGGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss138728275	ENSMUSSNP6943430	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss324171465	CHEV_12_114066031	CHEVERUD	SCREENING_POP	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs49726758					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112791440 () rs orientation: forward

Symbol	Name	Function Class
Cdca4	cell division cycle associated 4	within coordinates
Cpgi5185	CpG island 5185	853 bp proximal
Gm52009	predicted gene, 52009	250 bp upstream
Gm56552	predicted gene, 56552	1765 bp upstream
Rr387795	regulatory region 387795	1015 bp upstream
Tssr3960	transcription start site region 3960	1636 bp downstream
Tssr115439	transcription start site region 115439	1328 bp upstream
Tssr115440	transcription start site region 115440	1840 bp upstream
Tssr117911	transcription start site region 117911	1205 bp downstream
Tssr117912	transcription start site region 117912	1531 bp downstream
Tssr117913	transcription start site region 117913	1666 bp downstream