rs49728148 SNP Detail

Summary

• ID
  rs49728148
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30452391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGCAAGAA GGAGACAAAG TAATTCGTCC CGGGGTCAGC
  CAGGCTGGGG AGGAGATGGA GCAGTTTGGC CAGGGTGTCC GCCATACTAT TAAACAGGCT
  S
  AAAAGGAAGC AGAAAAAGTG GCCCATGGGG TACAGAATGG AGTCAACCAG GCTCAAAAGG
  AAGCAGAAAA AGTGGCCCAT GGGGTACAGA ATGGAGTCAA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss60990275	NES16139146	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs49728148					SNP	C	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990275	NES16139146	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30452391 () rs orientation: forward

Symbol	Name	Function Class
Sbsn	suprabasin	within coordinates
Tmem147os	transmembrane protein 147, opposite strand	within coordinates
Tssr65808	transcription start site region 65808	1423 bp downstream
Tssr71856	transcription start site region 71856	776 bp upstream