rs49728224 SNP Detail

Summary

• ID
  rs49728224
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:61870017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTTAATCAA AGGTAGTCTG ATTGTTTCAG ATGTACTTTC
  AGACTTGTGG TGATTGTATA TGATCTTGCC TTAGAGCACC CACCTGTTGA CTTACAATAG
  W
  TATTCTAATA GATATTTGTC AGACTGTACT TCCTCCCTCA CCCCCTCACT GGGTTCTATT
  GTCCTATAAA ATCTTGTCCT GCTGAGATTT GGGGCTCATC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61822530	NES17742258	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs49728224					SNP	A	A	A	T	A	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61822530	NES17742258	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:61870017 () rs orientation: forward

Symbol	Name	Function Class
1700028E11Rik	RIKEN cDNA 1700028E11 gene	within coordinates
Gm9595	predicted gene 9595	within coordinates
Gm49357	predicted gene, 49357	within coordinates
Gm49400	predicted gene 49400	1385 bp upstream