rs49728802 SNP Detail

Summary

• ID
  rs49728802
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30814267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCC CATCCAGGGA GCAGCCGACC
  C
  TGGGCTGGGG CCAGAGCATG CAAAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148699896	ENSMUSSNP1653724	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss322139434	CHEV_7_31899861	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49728802					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30814267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18835	CpG island 18835	1093 bp proximal
Hpn	hepsin	within coordinates
Rr645021	regulatory region 645021	within coordinates
Rr645022	regulatory region 645022	430 bp proximal
Rr645023	regulatory region 645023	1754 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	1682 bp downstream
Tssr71932	transcription start site region 71932	126 bp upstream
Tssr71933	transcription start site region 71933	385 bp downstream