rs49729011 SNP Detail

Summary

• ID
  rs49729011
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136010607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGAGGGA GGCCCTTCCA
  GGGAGGGACC TGACTTAAGC AGACTGCCTC AACACCAGTC ACTCTCCTTG TTCTAGGAGT
  TTGGTTATTG ACCCCTGACT CCGCTTTCTC TGAATGAGGC CTCAATTTGC TGGGTTACTA
  GTAATCCCAG GTAGGCTCTA CGGACCACTC ACTTGACACC GCCCACTGGC TGTATTTCCA
  K
  CGGAAATAGT GTGAAGATAA GGTCATCCCA GAGTGGACTT CCCAGACCTT CAGGCCACTG
  AATATACCCA CAGCATTTCT GGAAGTTTCT CCTGCTATGA AAGGCAGGCT CATCCAAATA
  CCTACGGTCT TAGTGTTCAT TTTGTGCAGG TGTGTTTTAA ATCCCTCCCC AACATCCTTA
  GCAGAGGCAA TTCCAACTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147564540	ENSMUSSNP5279654	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49729011					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136010607 () rs orientation: forward

Symbol	Name	Function Class
Rr398613	regulatory region 398613	1949 bp upstream
Rr602339	regulatory region 602339	within coordinates
Rr602340	regulatory region 602340	328 bp proximal
Tssr39694	transcription start site region 39694	1341 bp upstream
Tssr39695	transcription start site region 39695	1362 bp upstream
Tssr39696	transcription start site region 39696	1412 bp upstream
Zfp46	zinc finger protein 46	1387 bp upstream