rs49729993 SNP Detail

Summary

• ID
  rs49729993
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48002807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTCCCCA GGTAGGGGGG
  TCTGGTACAT ACTGGCCTCG TACCTCCCAG ACAGCTGCCC AAGGGATTGC AAGTGCTGTG
  GCAGCTCGTC CTCCTCTTCC TCTTCCTCCT CCTCCTCCTG CTCCTCTGTC TTGATCACGA
  TCCCCTCTGT TCCAAAGTTA GAAAGAAAGC ATTTATCTAC TTTCTAGAAC ACCTTTATCC
  Y
  GGATAAGTAC AACATGGCTT CAACCTCACC AACAGACTTT GTGCTACACA AACTCACACA
  CACACGGATA CATACATTTG TCCACATTCC TCCTTCTGGC AAATCTAGCT TCCTGTCCCA
  TGAATCCTAC CATCAGACAA CTAGCCATGA AACCCAGAGC TTAACAGGGA TCTCGTTGAA
  GAAGCAGGCT TCTCAGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60884684	NES16039110	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49729993					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60884684	NES16039110	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48002807 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17361	CpG island 17361	274 bp distal
Zfp777	zinc finger protein 777	within coordinates