rs49730001 SNP Detail

Summary

• ID
  rs49730001
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62719656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTGGACC TCATGAGTTC
  AAGGCCAGCC TGGTCTACAG AGCAAGTTCC AGGGTAGCCA GAGCTACACA GAGAAACCCT
  GTCTTCAAAA ACAAAATAAA AAAAAAAATA AAAGTATTTA TTCTCCTTAC CTAAAAAAAA
  TGAAAGGCTA GCTTCCTAAC AATACCAGTA GGCCGTGAAT TACAGTATTG ATGGCACCAT
  Y
  GGGGAATTTC CTCTCCCTCG AAAATCTCTT CTCTTGCTTA CCTCTGGAAG TCCCCTGAGC
  AGGCAATGGC TGCTGCACTT TCTTAAGTAA CCATTGAGCC CAAACATCAA TTTGAAATAA
  CACTGCAATC CTTCCAGCTG CCGCCGGTGC TAAAGTGTCA TTTGCATGCC TAAAGCTACA
  CGCAAACTGA TTTCAGGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52348712	NES15281845	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49730001					SNP	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52348712	NES15281845	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62719656 () rs orientation: forward

Symbol	Name	Function Class
Gm51805	predicted gene, 51805	within coordinates
Rr384811	regulatory region 384811	within coordinates
Tet1	tet methylcytosine dioxygenase 1	within coordinates
Tssr93732	transcription start site region 93732	1769 bp upstream