rs49730208 SNP Detail

Summary

• ID
  rs49730208
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:193908716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACACTGCC ACCACCACCA
  ACAACAAAAG AATATAGTCT CTGCTCAGCT TTAAACTATG TTGTCTGTTC TGAATGGGAA
  GATGGGCACA TGAGGTAGAC AAGGAAAAAC AGGAAAAAAA ACAAAAGAAA ACAAAACAAA
  AAACCAGTTT GATATGGAGG CCTGTCAGTT TAGACTTAGT ACAGAAACAG AAATTCCCAT
  K
  CCAGCCAGAA CTTTCTTAGC AGCCCTGGGA AGTGGAGGCC TGAGAGAAAA CTTGTGTGAC
  CATTTAATTC ATTACACTGC CCTGAGTCGG GGTGACTCTG GAGACAGCTG ATGGCTCCTG
  AGTATCTGCC AGTAAGAATT TGGCATCAAC TTGGGAATCT CTAATGCAAA AGTTCAAGAA
  ACGACTAGAA ACTTGTGTAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60365275	NES15864955	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49730208					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60365275	NES15864955	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:193908716 () rs orientation: forward

Symbol	Name	Function Class
Rr914	regulatory region 914	within coordinates
Rr426629	regulatory region 426629	318 bp distal
Rr426630	regulatory region 426630	within coordinates