rs49730637 SNP Detail

Summary

• ID
  rs49730637
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126221413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCTCTTT CCTCCCACTT
  TGGCTGAGTC TGAGTGTTGA GTAATGTTTC TGCTTATTTC TTCCAGTATG CTCCATCTTC
  TTCCTCTAAT AAAACTCTGC CCTCACCTCA GCTTGGGTTA GCAAATGGCT GGCAGCCAAG
  AATGGCATTC CCCGGCCTCT CTCTTCAAGC ATGTGACTAA ACTGTGAGCA GGTGCTATGC
  R
  TTCTACTATC AAATGGTATC CTTAAAAATA AATAGGGTTG AGCTGGAGAG ATGGCTCAGC
  GGTTAAGAGC ATTGACTGCT TTTCAGAGGT CCTGAGTTCA ACTCCCAGCA ACTACATGGT
  GGCTCACAAT CATCTGTAAT GGGATCTGAT GCCCTCTTCT GGTGTGTCTG AAGACAGCTA
  CCAGGTACTC ATATACAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145875101	ENSMUSSNP1559472	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49730637					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126221413 () rs orientation: forward

Symbol	Name	Function Class
Gm39087	predicted gene, 39087	within coordinates
Nupr1	nuclear protein transcription regulator 1	1005 bp downstream
Rr655536	regulatory region 655536	531 bp distal
Rr655537	regulatory region 655537	within coordinates
Rr655538	regulatory region 655538	146 bp proximal
Tssr69045	transcription start site region 69045	663 bp upstream
Tssr69046	transcription start site region 69046	1004 bp upstream
Tssr69047	transcription start site region 69047	1206 bp upstream