rs49731467 SNP Detail

Summary

• ID
  rs49731467
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126187837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCTTGAA TCTAGGAGTC
  TGATTAAGCC AGTGAGGAAC CTGCTCCACT GGCATCGATC ATGGATTCCT TTCCCGGTGC
  CCTTTCACAT CTGTCTCAGC TACTCGGAAG GCTACCCGGA AGACTGGGCT GGGGAAACTA
  TTTTCCCCTA AATTTCCCCA GTATGCTCAC CTGCCACCCA ATGTGAGATA AGACCAGCAA
  R
  TGTAAGTGTG CTTGCGTGTA AGATAGCACA CTTCTGGGGT GGAAACCAGC CCAAAGGAAA
  GAGGTTCAAG GGGCTGAGCA AGGGACACCA CTTGGAGTCC ACGGCCACCG GCAACAGATC
  AGTTGCTTTG AGTTTCCAAA ATGACGGCTC GGTATCACAG CTCTGCAGGT TACTATGCTA
  ACCTCCATGC CAGAGTTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145874684	ENSMUSSNP765653	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49731467					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126187837 () rs orientation: forward

Symbol	Name	Function Class
Apobr	apolipoprotein B receptor	mRNA-UTR
Il27	interleukin 27	345 bp downstream
Tssr69041	transcription start site region 69041	730 bp upstream
Tssr74769	transcription start site region 74769	1128 bp upstream
Tssr74770	transcription start site region 74770	1094 bp upstream
Tssr74771	transcription start site region 74771	500 bp downstream
Tssr74772	transcription start site region 74772	573 bp downstream
Tssr74773	transcription start site region 74773	591 bp downstream
Tssr74774	transcription start site region 74774	634 bp downstream
Tssr74775	transcription start site region 74775	736 bp downstream
Tssr74776	transcription start site region 74776	743 bp downstream
Tssr74777	transcription start site region 74777	782 bp downstream
Tssr74778	transcription start site region 74778	1155 bp downstream
Tssr74779	transcription start site region 74779	1391 bp downstream
Tssr74780	transcription start site region 74780	1588 bp downstream