rs49732115 SNP Detail

Summary

• ID
  rs49732115
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59699144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTT TTCCAGAAGT CCTGAGTTCA
  A
  CTCCCAGCAA CCACATGGTG GCTCA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss132241332	ENSMUSSNP3171800	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs49732115					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59699144 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2968	CpG island 2968	1218 bp proximal
Flcn	folliculin	within coordinates
Gm16062	predicted gene 16062	1762 bp upstream
Rr448261	regulatory region 448261	45 bp proximal
Rr448262	regulatory region 448262	206 bp proximal
Rr448263	regulatory region 448263	1260 bp proximal
Rr448264	regulatory region 448264	1544 bp proximal
Rr448265	regulatory region 448265	1688 bp proximal
Tssr101863	transcription start site region 101863	1789 bp upstream
Tssr101864	transcription start site region 101864	1969 bp upstream
Tssr101865	transcription start site region 101865	1991 bp upstream
Tssr108246	transcription start site region 108246	1456 bp downstream
Tssr108247	transcription start site region 108247	1708 bp downstream