rs49732324 SNP Detail

Summary

• ID
  rs49732324
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81334294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGAACCCG GGGCTTGCTG TCATGTTCTC AGTCACCATC
  AGGCAAGGTT CTTGTGTCCT GTCCCTTCTC ACCTCGTCTG GGAGGGCCTG CTCAGTGGGC
  R
  ACTGGCTGGT CCAAGCTCTA GGTGCTGCGG ACGCTGGAAA TGCTGGACAG CGGCTCTCTC
  ATCCTGAAGC TGAGTGACCG AGAAGTCCGA AAACTGTCCC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292400	NES16908899	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49732324					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292400	NES16908899	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81334294 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1993	CpG island 1993	1803 bp distal
Cpgi1994	CpG island 1994	60 bp proximal
Rr402085	regulatory region 402085	1875 bp downstream
Rr435686	regulatory region 435686	1578 bp distal
Rr435688	regulatory region 435688	941 bp proximal
S1pr4	sphingosine-1-phosphate receptor 4	within coordinates
Tssr98631	transcription start site region 98631	1136 bp downstream
Tssr98632	transcription start site region 98632	1162 bp downstream
Tssr98633	transcription start site region 98633	1190 bp downstream
Tssr98634	transcription start site region 98634	1226 bp downstream