rs49732603 SNP Detail

Summary

• ID
  rs49732603
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:13426914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTCG AGACAGGGTT
  TCTCTGTGTA GCCCTGGCTG TCCTGGAACT CACTCTGAAG ACCAGGCTGG CCTCAAACTC
  AGAAATTTAC CTGCCTCTGC CTTCCAAGTG CTGGGATTAA AGGTGTGCAC CATCACTGCC
  CCGCTCAGGT TCAACTCTTT TTTTTTATTT TCTGAGACAG TGTTTCTCTG TATAGCCCTG
  A
  CTGTCCTGGA ACTCACTTTG TAGACCAGGC TGGCCTCGAA CTCAGAAATC CGCCTGTCTC
  TGCCTCCGGA GTGCTGGGAT TAAAGGCGTG CACCACCACA CCCGGCCAGA TTCAACTCTT
  TTAAGACTTT TTGTTTTGCT AAAAAAGCAA TAGTGCTTCG ATTATACCTT TGAATCTCTT
  CCCCCTCCCT TTTGTTGTTG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146822597	ENSMUSSNP6716894	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49732603					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13426914 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adat2	adenosine deaminase, tRNA-specific 2			1737 bp upstream
Cpgi1315	CpG island 1315			1681 bp proximal
Pex3	peroxisomal biogenesis factor 3			Intron
				Noncoding-Transcript-Variant
Rr368928	regulatory region 368928			1769 bp upstream
Rr427802	regulatory region 427802			1397 bp proximal
Rr427803	regulatory region 427803			1658 bp proximal
Rr427804	regulatory region 427804			1735 bp proximal
Rr427805	regulatory region 427805			1940 bp proximal
Tssr96771	transcription start site region 96771			1685 bp downstream
Tssr96772	transcription start site region 96772			1829 bp downstream
Tssr96773	transcription start site region 96773			1893 bp downstream
Tssr96774	transcription start site region 96774			1941 bp downstream
Tssr96775	transcription start site region 96775			1970 bp downstream
Tssr96776	transcription start site region 96776			1985 bp downstream