rs49733158 SNP Detail

Summary

• ID
  rs49733158
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110342540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGTGTGGCCA GCCCATCCAG GGTCTTAGGG TCCAAGTCAT
  CTCTACCTCT TGTGCTTTAA AAACAATTAA TATGCATTGT TACTTTTCAA AGAAAAGGGG
  G
  GTGTGTGGGT GTGGGGGGGG GTGTTAAGCT AGGGTACCTT TTTCAACCTC CAGGTTAACA
  ATGAAAGCAA GATCCTAAAT TCTGAGAGTG AGGAAAGAAT T                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss138689927	ENSMUSSNP656297	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs49733158					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110342540 () rs orientation: forward

Symbol	Name	Function Class
Rr472874	regulatory region 472874	584 bp distal
Rr472875	regulatory region 472875	358 bp proximal
Rr472876	regulatory region 472876	641 bp proximal
Rr472877	regulatory region 472877	1688 bp proximal
Rr472878	regulatory region 472878	1752 bp proximal
Rr472879	regulatory region 472879	1832 bp proximal
Tssr115196	transcription start site region 115196	589 bp downstream