rs49733685 SNP Detail

Summary

• ID
  rs49733685
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:190804896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTGGGGAA AATGATGATT CGGGAGCTGA GGCATGTCGG
  CTCCTTTCAT CTCCCAGGGA GTTGTCTGCA CAAGGACGAA GTCCTCGTCA GTTTGTGCTG
  S
  TTTGCTGTGA CTGAGGGGTC AGTCACTCTG CTGCAGGGCG TGGCCTCCTT ACGGTGACTC
  AAGAAGCAGC GTGTGGTCTG TACCACATTC ACTGGGTGG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146501509	ENSMUSSNP4301723	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
ss320194695	CHEV_1_192896578	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49733685					SNP	G	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190804896 () rs orientation: forward

Symbol	Name	Function Class
Nsl1	NSL1, MIS12 kinetochore complex component	Intron
Rr426040	regulatory region 426040	539 bp distal
Rr426041	regulatory region 426041	within coordinates