rs49734838 SNP Detail

Summary

• ID
  rs49734838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:90785397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAGTCCA ACATCTAGGC
  CAGTGCACAC CAGGTTTTCA GAGGTGATTT GTCCAGTCTC CGTTTCCCCA TTTTAAAATG
  GGGGCAGGGG TTGTCTTCAT TCCTGTCCAG GCAAAATCTT TCAGAAGGTG TTCCCTAGCT
  TTGGAAACAG GCCCAGGGGC CAGCTGCTCT CTGTGAGAAC TGTCACATTT CATGCTAATG
  R
  CATCTTCCCT CCACAGCAAC TTGCAGTGGC CTCTGCAAGT TGTCAGTTTT TTTTTTTGAC
  ACTAAAGGCT CCTGTGCCAT TGAAGGAGTG GCAGGAGGAA GGAGGCTGCT GCCAGGAAAG
  TACCTTCCCC GAAGGTGAGA AGGTGAGATG AAGTTCCATG CTAGGAAGAG CGCTACTATT
  TCTGGTCTTG CCACGGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60908478	NES15947970	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49734838					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60908478	NES15947970	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90785397 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17728	CpG island 17728	1546 bp proximal
Iqsec1	IQ motif and Sec7 domain 1	within coordinates
Rr634329	regulatory region 634329	556 bp distal
Rr634330	regulatory region 634330	189 bp proximal
Rr634331	regulatory region 634331	1698 bp proximal
Rr634332	regulatory region 634332	1796 bp proximal
Tssr62052	transcription start site region 62052	1610 bp downstream
Tssr62053	transcription start site region 62053	1664 bp downstream
Tssr62054	transcription start site region 62054	1703 bp downstream
Tssr62055	transcription start site region 62055	1747 bp downstream