rs49734846 SNP Detail

Summary

• ID
  rs49734846
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:75422254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTTTGG ATCAAGAAGT
  AGAACTCTTG GCTCCTCCAG CACCATCCCT GCCTGGATAC TGCTATGCTC CCCGCTTGAT
  AATAAAGGAC TGAACCTATG GACCTGCAAG CCACCCCAAT CAAATGTCCT TTGTAAGAGT
  TGCTTTGTTC ATGGTGTGTC TTCACAGCAA TGGGAACCTA AGACAAGTAC TTATCACGAA
  Y
  ACAAGTGCAG TCTAGAGTAC ATTAAAGAAT CTGATCTTTT ATGAGGTGAC CGATTATTAA
  ATTGCCTATC TCAATCATCT TTAACAGTTT ACAATAAGTA GATTTATCTT GATAAGTTTA
  GCCTTAAAAA AAAAATCCTA AAATGAAGCT TTTCTATAGT ATAAAAATGA AGCTTTCAAT
  CATAAATAAG ACTAGTCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61022226	NES16110649	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49734846					SNP	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61022226	NES16110649	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:75422254 () rs orientation: forward

Symbol	Name	Function Class
AU020206	expressed sequence AU020206	within coordinates
Rr380973	regulatory region 380973	1621 bp upstream
Tssr73052	transcription start site region 73052	385 bp downstream
Tssr73053	transcription start site region 73053	1560 bp downstream
Tssr73054	transcription start site region 73054	1605 bp downstream
Tssr73055	transcription start site region 73055	1627 bp downstream