rs49735193 SNP Detail

Summary

• ID
  rs49735193
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84510874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACTTCAG CATTGTAGAA
  CTATGAACCG TGGCTGTGTT AAAAATGATA CATGTATTCA AATATTTCCA CAGAATTTAA
  AGTTTGATTT TATAATTAGT TTTTAAATTG CAAACCTTAC AAAAATTTTC CAAAATTTAC
  TTAGAAGCAT TTCAGAGCTC TTTTCTTTCA AAGCTGAAGT CTACCTTGCC TTCAGATTCA
  K
  AATCGTTCAC TCTACTTTAT AACTAACTGT GTGCGTACAC ACAACTATTT CTTTTTCTCT
  TTGCAGGTGC TGCAAACCAG GAAGGGGAAG TGTGTGGTTT AAGTTGCATA TCCCTTATCC
  TCTGGCTGCT GGAGGCTTGC TGAAGGCTGT ATGCTGTTAA TGCTAATTGT GATAGGGGTT
  TTGGCCTCTG ACTGACTCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60500113	NES16522454	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs49735193					SNP	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60500113	NES16522454	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84510874 () rs orientation: forward

Symbol	Name	Function Class
Mir155	microRNA 155	154 bp upstream
Mir155hg	Mir155 host gene (non-protein coding)	within coordinates
Rr404941	regulatory region 404941	651 bp downstream
Rr518521	regulatory region 518521	339 bp distal
Rr518522	regulatory region 518522	within coordinates
Tssr139173	transcription start site region 139173	216 bp upstream
Tssr139174	transcription start site region 139174	999 bp upstream
Tssr139175	transcription start site region 139175	1087 bp upstream
Tssr139176	transcription start site region 139176	1623 bp upstream