rs49735978 SNP Detail

Summary

• ID
  rs49735978
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:7262575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAACTAT GTGACACGGG
  AAATAGTGTC CCTTCTTACT GACTGAGAAG GGCGTGTGCA GTGTAGATGC CTTCAACTCT
  GGATTGTCTG TTTTCTGTCT GTCACAGAGA CATATGTCTC TCCCAAAGCT TAAATGCTAC
  CTGGGCTTAC AGGCGAGTTC GCAGATGGGC ACTGTTACTC TGTCCTGTTG ACAGTGTATC
  R
  AGTAAGCTGG CAGCTCTGTC TGCAGGACTG TGCTCATTTT CCCGGTTCAT TTGTATCTTC
  CTCTATAGAG AGTAGGGAGG TGGAGCCTAG GCTTGAGGAA GGTGCTGTGG TGGCCAATTG
  AGTTAGATCC TTCTGGACAA CCTCAGGATG GGGGCTTGTA GGGCTTCCCT GAGCTCATCG
  GATTCCTATT TAAGGTGATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
ss397554613	MGP_WTSI_17_7199525	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	A	G	A	A	A	A	A	A	A	G	A	G	A	G	G	G	A	G	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
rs49735978					SNP	G	A	A	G	A	A	A	A	A	A	A	G	A	G	A	G	G	G	A	G	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397554613	MGP_WTSI_17_7199525	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:7262575 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm49721	predicted gene, 49721			Intron
Rnaset2b	ribonuclease T2B			Intron
				Noncoding-Transcript-Variant
Rr521500	regulatory region 521500			417 bp proximal
Tssr146343	transcription start site region 146343			1911 bp upstream