rs49736815 SNP Detail

Summary

• ID
  rs49736815
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17691927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAG TGCCCGGCAA AATACTATAT
  R
  CCATCTACAT ATCATTTTTA GATAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133020622	ENSMUSSNP4191325	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss321756040	CHEV_6_17641928	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49736815					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17691927 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	1747 bp proximal
Gm55211	predicted gene, 55211	1498 bp upstream
Rr626833	regulatory region 626833	275 bp proximal
Rr626834	regulatory region 626834	1649 bp proximal
St7	suppression of tumorigenicity 7	1652 bp upstream
Tssr55085	transcription start site region 55085	1679 bp upstream
Tssr55086	transcription start site region 55086	1977 bp upstream