rs49737305 SNP Detail

Summary

• ID
  rs49737305
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91052364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACCCTAA AGAAACCTCG
  TGCCTTATAA TGATCCCCAC ATCTCTCTGC AGAGCCACTC TCAAGGGCGG TCAAAAAGTT
  TGCCTTGACC CTGAAGCCCC CCTGGTTCAG AAAATCATCC AAAAGATACT GAACAAGTGA
  GTCGCGATTT GTGCTTACAC CTGACTGGCA CCCGATTTCT GAAAATTATA GCAGGGAAAA
  Y
  CAAGGTTAAC TTCAGTTCAG GAACCTGAAT TATTATTTTC ATTGTTAACT TTGTCCTGTG
  AGCATCAGTT TGAATTGATA GAAGGGTACG ACTAGCTCCT TTCATCTACA CACGTAAAAG
  TCCTTCCTTA ATGGATGGTC GCTGTGTGTC CCTAAGAATT AAGTAGATAG AACCAACTAG
  CGCTGGTGTA AAGCCTGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198263	NES16702729	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49737305					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198263	NES16702729	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91052364 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Gm73232	predicted gene, 73232	1301 bp upstream
Rr614420	regulatory region 614420	1312 bp distal
Rr614421	regulatory region 614421	1443 bp distal
Rr614422	regulatory region 614422	622 bp distal
Tssr47224	transcription start site region 47224	796 bp downstream
Tssr47225	transcription start site region 47225	694 bp downstream
Tssr47226	transcription start site region 47226	625 bp downstream
Tssr47227	transcription start site region 47227	431 bp downstream
Tssr47228	transcription start site region 47228	368 bp downstream
Tssr47229	transcription start site region 47229	347 bp downstream
Tssr47230	transcription start site region 47230	322 bp downstream
Tssr47231	transcription start site region 47231	292 bp downstream
Tssr47232	transcription start site region 47232	145 bp downstream
Tssr47233	transcription start site region 47233	95 bp downstream
Tssr47234	transcription start site region 47234	60 bp downstream
Tssr47235	transcription start site region 47235	683 bp upstream
Tssr47236	transcription start site region 47236	703 bp upstream
Tssr47237	transcription start site region 47237	752 bp upstream
Tssr47238	transcription start site region 47238	758 bp upstream
Tssr47239	transcription start site region 47239	818 bp upstream
Tssr47240	transcription start site region 47240	830 bp upstream
Tssr47241	transcription start site region 47241	845 bp upstream
Tssr47242	transcription start site region 47242	882 bp upstream
Tssr47243	transcription start site region 47243	905 bp upstream
Tssr47244	transcription start site region 47244	939 bp upstream
Tssr47245	transcription start site region 47245	959 bp upstream
Tssr47246	transcription start site region 47246	1010 bp upstream
Tssr47247	transcription start site region 47247	1054 bp upstream
Tssr47248	transcription start site region 47248	1117 bp upstream
Tssr47249	transcription start site region 47249	1187 bp upstream
Tssr47250	transcription start site region 47250	1325 bp upstream
Tssr47251	transcription start site region 47251	1389 bp upstream
Tssr47252	transcription start site region 47252	1441 bp upstream
Tssr51810	transcription start site region 51810	1362 bp upstream
Tssr51811	transcription start site region 51811	1308 bp upstream
Tssr51812	transcription start site region 51812	278 bp upstream
Tssr51813	transcription start site region 51813	261 bp upstream
Tssr51814	transcription start site region 51814	702 bp downstream
Tssr51815	transcription start site region 51815	736 bp downstream
Tssr51816	transcription start site region 51816	770 bp downstream