rs49737993 SNP Detail

Summary

• ID
  rs49737993
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:74854947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTCTCAG CAGTGCTCTG
  GCCCTGGCTA AACCTCTTAA AATAGGTTAT AGGGAAAGCA ATTCCCAGAG TCGAGATAAG
  ACCTCTCTCT CTTCCTTGAC CTTATTCATG CCTTAAGTCT CAGATTCATT CAGTGAGCAC
  TGAAGGCTCT GATAATGTGC GATCTTTTTA ATAGGTACTG ATTATGAACG GAGATACATT
  M
  TTCCTTGCCT TACAGAATTG TAGATAACCA GGAAAACCAG GCATTTCAAT GACCTGAAAA
  CAAAGAGTCA CTTATGGGAT AAAAACTATC TTTAAAATAA AAGGGAAGGT TGGAGGAGGA
  ACCTGTGTGT GCACAGGGGA GGGACCTGCA CTTCACCTTG GGAGAAGGAG GCAGGTACTC
  GAAGCCTGCT GCGAGGATTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61183436	NES16691596	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	C	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49737993					SNP	A	A	A	A	A	A	C	A	A	C	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61183436	NES16691596	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:74854947 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lnx1	ligand of numb-protein X 1			Intron
				Noncoding-Transcript-Variant
Rr613329	regulatory region 613329			1545 bp distal
Rr613330	regulatory region 613330			124 bp proximal