rs49739274 SNP Detail

Summary

• ID
  rs49739274
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:18090710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATAAGAAG TGATGCAAAA
  TTGTAACTCA CCAGCAGAAA AAAAATGCCT AGATTTACTG AGTAAAGGGC TGGGCATGAC
  TCAAAGGTAG AGCTCCTACC TAGAATCTTC CAGTGAGGAG CTAAGGTAGC TTGGGGGTAG
  AACTTCTGCC TAGAATCCAC AGTGAGGGTC TGGGGATCTG GTTCATTCTA AGAAGTAGGG
  Y
  ATTTGTTCAT CATGTATATG GGCTTGGTTT CTGTTCTCTA TATTGTCACC ACCGCAAAAC
  AATAAGGAGA AAACTGATAC AAAATACCAC AACTAAATAC CGTAAATACC AAAAACTAAA
  AGAGAAATAT CCATAAAAAC CTTTAAAACA AAAAATAAAA ATAAAGGCTA CAGAGCATGC
  ATTATTTGTC TCCTTTTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60545763	NES16558031	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49739274					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60545763	NES16558031	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:18090710 () rs orientation: forward

Symbol	Name	Function Class
Gm36907	predicted gene, 36907	within coordinates
Rr340653	regulatory region 340653	691 bp proximal
Tssr5021	transcription start site region 5021	693 bp upstream
Tssr5022	transcription start site region 5022	717 bp upstream
Tssr5023	transcription start site region 5023	1246 bp downstream
Tssr142818	transcription start site region 142818	1515 bp upstream