rs49739461 SNP Detail

Summary

• ID
  rs49739461
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:164147181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAT TGTGTCAAGC AAAGCTTTCT
  Y
  GAATATGACA TCAAAACCAC AAGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145976366	ENSMUSSNP4072929	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320085577	CHEV_1_166249743	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49739461					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164147181 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nme7	NME/NM23 family member 7			Intron
				Noncoding-Transcript-Variant
Rr422185	regulatory region 422185			63 bp proximal
Rr422186	regulatory region 422186			1130 bp proximal
Rr422187	regulatory region 422187			1682 bp proximal