rs49741410 SNP Detail

Summary

• ID
  rs49741410
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:56904762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGATAGG CTTAATGGCT
  GGTTGTAAGT TAGGGTTGTC TCCTTTTGTT GTGGAAATGG AGTCTAATTG GAGGTCAATC
  TTAGTGCACT AACGTTAACA GAAACTTTCT CAGCAACCCA AAACTTCAAT GTTGGCACAA
  AAATGTCTTT CCTAGAGTTT GTAATAAGCC TGGTAATTCT CTTCCAATCA TATCGCAGGC
  W
  CGCTTCCTAG TGACTCCTTT GTAGCATCAA TATTACTCGT TTCTCTTGCA TCAACCCCGC
  ACCTGCTTCT GATATTTTCA ATTCAATAAG AAGCAAGGGA ACTTGGGAAC AAACACATAG
  GTGGTTTTGG CTTGGTTTAT CAGGTGTGAA TGATCCAATT AATTAAGTAT AGCCCAAATG
  GGGCCAAGCC AGGCAACCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52725521	NES15565034	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49741410					SNP	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52725521	NES15565034	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:56904762 () rs orientation: forward

Symbol	Name	Function Class
Btf3-ps18	basic transcription factor 3, pseudogene 18	1098 bp upstream
Cpgi6529	CpG island 6529	543 bp proximal
Gm62612	predicted gene, 62612	within coordinates
Mphosph8	M-phase phosphoprotein 8	943 bp upstream
Rr369836	regulatory region 369836	678 bp upstream
Rr492707	regulatory region 492707	50 bp proximal
Rr492708	regulatory region 492708	799 bp proximal
Rr492709	regulatory region 492709	908 bp proximal
Tssr125847	transcription start site region 125847	937 bp upstream
Tssr128934	transcription start site region 128934	716 bp downstream