rs49741544 SNP Detail

Summary

• ID
  rs49741544
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106483187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGTGTG
  TCTACTGTAT GGAGGCCTGG TGTCTTAGGA GGCCAGAAGA GAATGCCAGA CTCTCTGGAA
  TTACATTTAT GGGTGGCAAG CCCCACACGA GTGCAGGGAA ATCAGCCTTT CCTCTGCAAG
  AGCATCAAGA GTTCTTTACC ACTGCGCCAT CTCTCTACAC GGCCCCCTTC TTTGTGTTTT
  R
  AGACTGCCCC AGAACTTGCC ATCTTCTTGC TTCCATATCC TGGGTGCTAG GATTATAGGC
  ATTTATCAGC CTCACACACA CACACACACA CACATACACA CACACCACAA AAGTGGCTGA
  TCAGGTAAAA AGTATCCGCT GCCCAGCCTG ACATCCAAGT TTTAGCCCCA GGATCCACAT
  GGTAGGTCTA GATGTCCCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60659114	NES16259897	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49741544					SNP	A	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60659114	NES16259897	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106483187 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20952	CpG island 20952	1567 bp proximal
Gfod2	glucose-fructose oxidoreductase domain containing 2	within coordinates
Rr185898	regulatory region 185898	613 bp proximal
Rr401096	regulatory region 401096	1974 bp upstream