rs49741983 SNP Detail

Summary

• ID
  rs49741983
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80076490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAG ACATGGGGAG AGAAACCTCC
  R
  TGAGTGTGGA GTATTGTGTG CAAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148214328	ENSMUSSNP1580719	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss325030266	CHEV_15_80022719	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49741983					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80076490 () rs orientation: forward

Symbol	Name	Function Class
Gm63613	predicted gene, 63613	within coordinates
Mgat3	mannoside acetylglucosaminyltransferase 3	within coordinates
Rr505907	regulatory region 505907	1884 bp distal
Rr505908	regulatory region 505908	144 bp distal
Rr505909	regulatory region 505909	223 bp proximal
Rr505910	regulatory region 505910	724 bp proximal
Tssr4660	transcription start site region 4660	821 bp upstream
Tssr132185	transcription start site region 132185	411 bp downstream
Tssr132186	transcription start site region 132186	107 bp downstream
Tssr132187	transcription start site region 132187	711 bp upstream
Tssr132188	transcription start site region 132188	764 bp upstream
Tssr132189	transcription start site region 132189	784 bp upstream