rs49742118 SNP Detail

Summary

• ID
  rs49742118
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:33282582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAATTATAA TCTCAAAAAC TAAAGAAGTA ATTTTTTTAT
  AAAGTTAATA TCCTACCCCT TTTGTAAGCT CTTTTGCTTA CTTACCAGGC CACGGTCACC
  Y
  GATACGGCCA CAAGGAATGA AACCAGGCCA CTTGAAGAAT CCATAGCAAA ACTTAAGCTG
  TGGCAATTTT GTTGAGAAAA ATCAGACTTT TTATAACCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60716608	NES16352452	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	T	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49742118					SNP	C	C	T	C	T	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60716608	NES16352452	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:33282582 () rs orientation: forward

Symbol	Name	Function Class
Gm70823	predicted gene, 70823	1522 bp upstream