rs49742290 SNP Detail

Summary

• ID
  rs49742290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134022486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGTTGCA CATACGTACC
  TTCTTTCTAC AGTGTTGAGC TACAGGCACA GAGTGAACAC TTCACAGTAA CGGTTACAGC
  TTTAGCGGCA ATGACAGTAA TGGATGCTCT CCGGGATCAT CGGGTGCTCC AGGTTCGCCT
  GTAGGGTCCT TTCCTCTTAG TTCTTCCAGG ACCCTTGTCA TTCCCCTTAC CCCCTGCAGC
  Y
  AATCACTAGC CAGGCTTCCA GGGAAGAGTA CCCATGGTAA GAAAACTAGA CAGCTCTACA
  CCCCATCTCT GTCATGCCTG TGACATGGGA CCCTTCTGAG CCTTGGTGTC CCCACTCCAT
  GGAATGGGGG GGAACACCTT CAAATTGGAG CCCCTGTGGT AGGAGATTAA AGTTGGTAAA
  GGGACTCTGC AAACAGCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145503519	ENSMUSSNP1489635	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49742290					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134022486 () rs orientation: forward

Symbol	Name	Function Class
Cpgi761	CpG island 761	1187 bp distal
Gm32039	predicted gene, 32039	within coordinates
Gm38140	predicted gene, 38140	1657 bp downstream
Gm70605	predicted gene, 70605	within coordinates
Gm70614	predicted gene, 70614	1853 bp upstream
Rr366718	regulatory region 366718	1532 bp downstream
Rr396310	regulatory region 396310	1203 bp downstream
Rr396311	regulatory region 396311	523 bp downstream
Rr418807	regulatory region 418807	1864 bp distal
Rr418808	regulatory region 418808	1619 bp distal
Rr418809	regulatory region 418809	105 bp distal
Rr418810	regulatory region 418810	1073 bp distal
Tssr8854	transcription start site region 8854	1444 bp downstream
Tssr13771	transcription start site region 13771	821 bp upstream