rs49742339 SNP Detail

Summary

• ID
  rs49742339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:74605637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGGGTGG GAGCTGCACA
  GAGGAGTTCA CAGGTACCAG CTTGGCAAAG GTGTCTTCCC TGAGGGGAGG GCTGCGGGTG
  TAGAGCCTGG CTGGAAGGCA CTGTACAGTC TTGCTAGCAT TCCAGACCCA ATCCCAGAAG
  CCCCAGGAAG CCTAGCTTGT CTCCAATCAA TTCAGACACA CAGGGAAGTC ATCCCTCCCC
  Y
  AACCCCACAC AGACAGTGAC CTGGTAGGGC CTCTGCCTCT GGTTCAGTCA ACCTCTCCAA
  GAACTGTATG GAACAGCCTG GCTTGAGCCC TCATCACTGA GCACATAACG GGCTGACAGT
  CAACATCATG TCGCCACTTG TTTGTCTCAC CCTGTCTCTG GATATTTCTG GATGTCCTTT
  CCCCAATTAC ATGTCCATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148149796	ENSMUSSNP1288535	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49742339					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74605637 () rs orientation: forward

Symbol	Name	Function Class
Gm33124	predicted gene, 33124	1093 bp upstream
Lypd2	Ly6/Plaur domain containing 2	within coordinates
Tssr134735	transcription start site region 134735	504 bp downstream
Tssr134736	transcription start site region 134736	526 bp downstream
Tssr134737	transcription start site region 134737	570 bp downstream
Tssr134738	transcription start site region 134738	972 bp downstream