rs49742759 SNP Detail

Summary

• ID
  rs49742759
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:118407764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTAGGAG CACGAAGGGA
  CCATTCCCAC TACGCCTTCT CTGAGGTGTT CATCGCTTTG ATCTCCTAGG TGGAAGAAGA
  TACCGACTCT CTGTGGTTCT TCTCCGTTCA AGGTCACACA CAAACCATCT GCCTGGTGAG
  AAATCCAGAC CAGGTGTCTC CAGGTATCTC CGGAGGGCAC CTCGTGAGCA TGCCCTGTGC
  R
  ACATGGTGCT AAATAGGTCG CTTATGATTC AACTGCCACC CACCCTCCTG ACCTAGGTAG
  GTCTTCTCAT CTCTGTTTTA TGGACACAAA TTCAGGGGAG ATTTGCACTG GCTTCCTGGC
  GTTAGCCAGG GGTACCCTCC ACTGGGAAGA CAGCTCCTGC TATATGGGAA GTGGGGTCCC
  TAGGAGTAGC AGGTTAGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60831455	NES16022154	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49742759					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60831455	NES16022154	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118407764 () rs orientation: forward

Symbol	Name	Function Class
Gm73266	predicted gene, 73266	within coordinates
Rr618848	regulatory region 618848	435 bp distal
Rr618849	regulatory region 618849	484 bp distal
Rr618850	regulatory region 618850	within coordinates