rs49742857 SNP Detail

Summary

• ID
  rs49742857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23790943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATATTTCA GACAGCCAGC
  TATGGGCACG AGGCCTTTCG GAAGGTCTGG GCTGACCACC ATAGTTGCCG TTCCAGCCCA
  GATCCAGAGC TTTGTCTTGG TAAAGCTCAA TGTCTTTACC ACCTACAGGC TGCCAGAGTA
  GGTGGAGGCG CAGGTCCTGG GTCCACCAGC CAACCCACAC CTCAGAGCTG CAGCTGCTGC
  Y
  ACTGCCTGAG CTACCTGTCC TGCTGGGAGG TGGAGCCCAC AAGACAGTGG GCATGCCTGA
  AGGCTATGAG CACAACTTTT AAATCGGATT ATTAAGTTAC TCATATATGT TGAACTTAGG
  TATGTTTTAA AGAATGTAAA ATAAAATAGG TTTGTTTTTT TAAGAAATGA TATTTGTATT
  AGTACCTCCT CCGGCCCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148061124	ENSMUSSNP5563984	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49742857					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23790943 () rs orientation: forward

Symbol	Name	Function Class
Rr117577	regulatory region 117577	858 bp proximal
Srpk2	serine/arginine-rich protein specific kinase 2	within coordinates
Tssr1438	transcription start site region 1438	849 bp upstream
Tssr50280	transcription start site region 50280	675 bp downstream