rs49742992 SNP Detail

Summary

• ID
  rs49742992
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24568107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGG GTTGAAGGCC AGCCTGGTCT
  T
  CAGAGTGAGT TCCAGGACAG CCAGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145351297	ENSMUSSNP6734887	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325330787	CHEV_17_24486078	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49742992					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24568107 () rs orientation: forward

Symbol	Name	Function Class
Abca17	ATP-binding cassette, sub-family A member 17	within coordinates
Cpgi8716	CpG island 8716	1690 bp proximal
D17Jcs14	DNA segment, Chr 17, John C. Schimenti 14	198 bp distal
Rr523280	regulatory region 523280	1736 bp proximal
Rr523281	regulatory region 523281	1886 bp proximal
Tssr146725	transcription start site region 146725	1920 bp downstream
Tssr146726	transcription start site region 146726	1939 bp downstream