rs49743045 SNP Detail

Summary

• ID
  rs49743045
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40247815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTGGAAA ACAGTTGTTA
  GTTTCAGTTC ATATGAGTGC ACACTTCTGT GGTCTGTTTC CCAGTAGTCG AGGAGCATAC
  GTGTTTTCCT GTTTTTGAAG TGTATGTAGT AAAAGTCAAG CACTCAAGCT CAGTTAGCAT
  TTGAGTTTTA ATTTTGTTTT TCATAATTGG TTGCAAAATA TATGATGACC TGTGATACTT
  W
  ATTGATTTTC TTGTTGTCTG ATCTAAAGTC TGATTTCTTT GGCAGATATG TAGACTTACA
  TCGGCATTTG ACATTTTATG TTTTGGGCAG TGGAACTTTA AATATACATA AACTCTGCTG
  TTTGCCTCTG TTGTGTTTGG AGGTCCCAGG ATGGCTTTGT GTGTGGTCCT CACGTGATGG
  AGGTTGCAGA CTTCTCAGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52244058	NES15264542	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49743045					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52244058	NES15264542	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40247815 () rs orientation: forward

Symbol	Name	Function Class
Cdk19	cyclin dependent kinase 19	within coordinates
Rr214651	regulatory region 214651	1215 bp distal
Rr214652	regulatory region 214652	1586 bp proximal
Rr222642	regulatory region 222642	1944 bp distal
Rr384549	regulatory region 384549	within coordinates