rs49743794 SNP Detail

Summary

• ID
  rs49743794
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46654889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAC AAAAGAACAT AAGCTATTAC
  R
  TTTCTCTCTC CCCCTCCCTT CGTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148973551	ENSMUSSNP2668079	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss324333684	CHEV_13_46596782	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49743794					SNP	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46654889 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	490 bp upstream
Cpgi5539	CpG island 5539	370 bp proximal
Gm35110	predicted gene, 35110	within coordinates
Gm61509	predicted gene, 61509	1482 bp upstream
Rr478915	regulatory region 478915	264 bp proximal
Rr478916	regulatory region 478916	446 bp proximal
Rr478917	regulatory region 478917	547 bp proximal
Rr478918	regulatory region 478918	992 bp proximal
Rr478919	regulatory region 478919	1503 bp proximal
Tssr119597	transcription start site region 119597	446 bp upstream
Tssr119598	transcription start site region 119598	485 bp upstream
Tssr119599	transcription start site region 119599	624 bp upstream
Tssr119600	transcription start site region 119600	636 bp upstream
Tssr119601	transcription start site region 119601	700 bp upstream
Tssr119602	transcription start site region 119602	728 bp upstream
Tssr119603	transcription start site region 119603	1476 bp upstream
Tssr122343	transcription start site region 122343	1374 bp downstream