rs49743869 SNP Detail

Summary

• ID
  rs49743869
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41494774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTTTTT TTTTAAGCAT
  TTATCGCAAT TTGACTCATT TTAATCCAAA CTGCAGTCAA GAAAGCATTT TGTATCAGAA
  CGCTGAACTG AGAAGTGTGT AACAACTGTG CTGTGTCTTT TGTTGAAACC TCCTGTGCGG
  CTGTAATTTA ACTATTACTT GGCAGCATTT GGTGGAATGT GCTTCAAAGC TTACAGTTCT
  R
  TAAGTGATTG CCCGTGAGTT TATATAAAAT AATTAACGAT TCCCCACCCC ATTTCAGCCA
  ATGCGTATGT ATAGCTATGT AGAAATTATG GCAGTACAAC AGTTTAACTC ATGGGCAATA
  TATATACTCA CATCATACAT GCAAAAGACC GGCAGACATT TGGTGCTTTT GAAGGCAAGA
  TATGTACGCA GCCTATCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	PWD/PhJ	WSB/EiJ
ss61386146	NES16764678	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	PWD/PhJ	WSB/EiJ
rs49743869					SNP	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386146	NES16764678	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41494774 () rs orientation: forward

Symbol	Name	Function Class
Gm28119	predicted gene 28119	626 bp downstream
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Mir125b-1	microRNA 125b-1	1476 bp downstream
Rr677064	regulatory region 677064	1865 bp distal
Rr677065	regulatory region 677065	1466 bp distal
Rr677066	regulatory region 677066	1339 bp distal
Rr677067	regulatory region 677067	758 bp distal
Rr677068	regulatory region 677068	within coordinates
Rr677069	regulatory region 677069	1310 bp proximal
Tssr84527	transcription start site region 84527	1474 bp downstream
Tssr84528	transcription start site region 84528	436 bp downstream
Tssr84529	transcription start site region 84529	933 bp upstream
Tssr84530	transcription start site region 84530	1913 bp upstream