rs49744849 SNP Detail

Summary

• ID
  rs49744849
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116387014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCACTAG CTTTGCAACT
  TTTCTAAATG CTAGTTACAG TCTTTTATGT TTTATGCATT TAATTATAGG CACTGGGAGA
  AAAGCAAGGG AAACAATGTT GGCAGGTCTG CCCCACAGAT CCTATCAACC TGGATGCAAC
  AGGATGGCCC AATTATTAAA TCCAGAGGCC AGTGGTTAGG TGTGATTCTC AGCTCTTTCT
  R
  TTAGCTGCTA ACTCTATAAT CCTGACTGCT TCATGTAAAT AATAGTATAG ACTTTCTATA
  TTAAGTATAG ACTTACTATA TTATTAAGTA GAATAATAGT ATGACTTGCT TCCTAAGGTT
  TGTGAAAATT GAATTTTTAA AAGCAAAATA ACGTTTAGTA CTAGCCCTAC AGCCAAAGCT
  GACCAAGTAT TTACTCTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ
ss60436764	NES15940893	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ
rs49744849					SNP	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60436764	NES15940893	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116387014 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	1111 bp proximal
Rr397965	regulatory region 397965	1398 bp upstream
Rr583746	regulatory region 583746	1085 bp proximal
Rr583747	regulatory region 583747	1382 bp proximal
Rr583748	regulatory region 583748	1463 bp proximal
Rr583749	regulatory region 583749	1656 bp proximal
Rr583750	regulatory region 583750	1824 bp proximal
Sass6	SAS-6 centriolar assembly protein	1617 bp upstream
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	1594 bp upstream
Tssr35316	transcription start site region 35316	1451 bp downstream
Tssr35317	transcription start site region 35317	1483 bp downstream