rs49746458 SNP Detail

Summary

• ID
  rs49746458
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26755416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTG ACAAGAACAC AGGTGTCCAC
  R
  CTTCTGGCCG AGTCTGTCTG GTAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss60554815	NES16569720	PERLEGEN	MM_PANEL2	f	SNP		A	A	G	A	A	G		G	A	G
ss145405398	ENSMUSSNP2630902	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss325342274	CHEV_17_26673387	CHEVERUD	SCREENING_POP	f	SNP								G				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs49746458					SNP	A	A	A	G	A	A	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60554815	NES16569720	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26755416 () rs orientation: forward

Symbol	Name	Function Class
Gm34606	predicted gene, 34606	78 bp downstream
Gm50275	predicted gene, 50275	within coordinates
Gm64855	predicted gene, 64855	683 bp downstream
Rr405114	regulatory region 405114	1608 bp upstream
Rr523870	regulatory region 523870	1911 bp distal
Rr523871	regulatory region 523871	1398 bp distal
Rr523872	regulatory region 523872	1099 bp distal
Rr523873	regulatory region 523873	316 bp distal
Rr523874	regulatory region 523874	1350 bp proximal
Rr523875	regulatory region 523875	1788 bp proximal
Tssr5048	transcription start site region 5048	1085 bp downstream
Tssr5049	transcription start site region 5049	1034 bp upstream
Tssr5050	transcription start site region 5050	606 bp downstream
Tssr143246	transcription start site region 143246	1888 bp upstream