rs49746616 SNP Detail

Summary

• ID
  rs49746616
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:4217649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCGTGTCC GCCTGCGACC
  TTTCCCCACC CCGGCCTCTT TCCTGGTTGC ACCACTTCCT CTCATTCCAA AGTATGTGGA
  TTTTTTTGGG CGGGGGGGGG GCTGTAGCAA GCAGGGGTGA AAGATGATTT GGTTGGAGAG
  TGGGCACCTG CAGAACAAAC AGGTGGAAAG TTCTCTATAG GGCCTCATTG AGGAAGATGG
  K
  ATTAAAGGCA ATCGTTTTAG GAAGCCAGAG TCTAGTGGCA GTTTTAAGAG ATGGTCTACA
  GAAACCCCAG CTCCCAGCCT GCACGGCCTG CAAGGGGTTC AGCTCAGAGT TCTAGGCTCC
  AGTGGGCCAA TGGACACCAA CCAAGTTAAG AATCTGGCCG GTCCTGGAAA GGGGAGGACG
  GTTTATTTCT CTTCCCCTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss131631481	ENSMUSSNP5178816	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49746616					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:4217649 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2511	CpG island 2511	519 bp distal
D11Mit16	DNA segment, Chr 11, Massachusetts Institute of Technology 16	1911 bp proximal
D11Mit16.1	DNA segment, Chr 11, Massachusetts Institute of Technology 16.1	1851 bp proximal
Lif	leukemia inhibitory factor	within coordinates
Rr385518	regulatory region 385518	within coordinates
Rr441798	regulatory region 441798	1900 bp distal
Rr441799	regulatory region 441799	544 bp distal
Rr441800	regulatory region 441800	13 bp distal
Rr441801	regulatory region 441801	917 bp proximal
Tssr100122	transcription start site region 100122	1152 bp downstream
Tssr100123	transcription start site region 100123	1105 bp downstream
Tssr100124	transcription start site region 100124	976 bp downstream