rs49746979 SNP Detail

Summary

• ID
  rs49746979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172301194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTA CACCAAGAGT GTACATAGGA
  Y
  AAAGGCTCCT CTTCTGAGGA AAGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss120011336	PARCsnp_1.19746	PARC_SEQ	INBRED	f	SNP		T	C
ss120014408	PARCsnp_1.09777	PARC_SEQ	INBRED	f	SNP		T	C
ss146193183	ENSMUSSNP7073417	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320125585	CHEV_1_174403758	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs49746979					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172301194 () rs orientation: forward

Symbol	Name	Function Class
Gm7804	predicted gene 7804	396 bp upstream
Gm70809	predicted gene, 70809	within coordinates
Gm70814	predicted gene, 70814	355 bp downstream
Rr396588	regulatory region 396588	289 bp downstream
Rr423578	regulatory region 423578	1439 bp proximal
Slamf9	SLAM family member 9	1733 bp upstream
Tssr10198	transcription start site region 10198	1744 bp upstream
Tssr10199	transcription start site region 10199	1760 bp upstream
Tssr10200	transcription start site region 10200	1800 bp upstream
Tssr15219	transcription start site region 15219	1538 bp downstream