rs49748089 SNP Detail

Summary

• ID
  rs49748089
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32303839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTAACTA TGAGACCTGG
  GGAGTTAACC TGCTTCCGAA TCCTCTCGGG TTCTACCTGC ACATGTAGTG GCAAGGTGAC
  ATGAGAATCA ACATTGTGTG ACACAGGCTT CAGAGCCTGA GTCCCGCTGA CACTTTTGAG
  TTTATTCTGA GCTGTAGAAT GCTGTGCTGT GACCTGCAAG TGGTTTAGTG GCCTCCTTGG
  S
  CCCTACATAT TAGATGTTAA GGACAGCCAA CTGCTGGGCA GTGGTGGCGC ACTCCTTTAA
  TCCCAGCACT TGGGAGACAG AGGGAGGTGG ATTTCTGAGT TTGAGGCCAG CCTGGTCTAC
  AGAGTGAATT CCAGGACAGC CAGGGCTACA CAGAGGAAAC CCTGTCTCGA AAAAAGAAAA
  CAAAAACAAA CAAACAAACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss63736663	NES17074359	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49748089					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63736663	NES17074359	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32303839 () rs orientation: forward

Symbol	Name	Function Class
Rr514710	regulatory region 514710	within coordinates
Slc51a	solute carrier family 51, alpha subunit	within coordinates
Tssr140806	transcription start site region 140806	1147 bp downstream