rs49748098 SNP Detail

Summary

• ID
  rs49748098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127430949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATGCGCT TAATAGCCAT
  GTGTGTATGT TCTTGAAGCA ATATCTGTTC AAATCTTTTG TCTGTGTGCG CCTGTAACTT
  GATTGTGTGG TTCTTGACCA TGAATTTCCT AGATTAGAGG GAAACACTTG ATCTAACCGT
  GTGCATGCTA GGCACATGCT CTACAACTGA GCTGCACGCT CGAGTGTTAG AAGGCTTGGA
  Y
  CCTGTCGGTA GAGCCATGGG TTATGGATGC TTAGGAGCCG GAGCCATGCT GGAGGTAGTG
  AGTCTGTGGA GGTGGGCTAG GGAGCTTCAT CACCTGCCTT CCACGCCTGA TCACCTGCTT
  CCGGGGTGTG GATGTGGTTT TCTGCCGCCA TGTCTTCACT GCTTGCTGCC ATGACTTCTC
  TTCCATGGTG GTCTGAATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147535377	ENSMUSSNP4948442	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49748098					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127430949 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12227	CpG island 12227	1005 bp distal
Mrps5	mitochondrial ribosomal protein S5	Intron
Rr564563	regulatory region 564563	1946 bp distal
Rr564564	regulatory region 564564	1797 bp distal
Rr564565	regulatory region 564565	919 bp distal
Rr564566	regulatory region 564566	1448 bp distal
Rr564567	regulatory region 564567	436 bp distal
Rr564568	regulatory region 564568	1045 bp proximal
Tssr20024	transcription start site region 20024	1766 bp downstream
Tssr20025	transcription start site region 20025	1750 bp downstream
Tssr20026	transcription start site region 20026	1599 bp downstream
Tssr20027	transcription start site region 20027	1292 bp upstream
Tssr20028	transcription start site region 20028	1713 bp upstream
Zfp661	zinc finger protein 661	1935 bp upstream